Basic Information
VIS ID
TVIS44033424
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
171184246/172948483 (Hg38)
End
171184246/172948483 (Hg38)
Orient
-
Fragile sites / regions
FRA1G
Nearest miRNA
hsa-mir-101-1/Upstream/803839; hsa-mir-1182/Downstream/3019887;
Nearest TSS
ENST00000473358/Upstream/41583; ENST00000460950/Downstream/102480;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/415078, chr1-CpG: 100/Downstream/528356
Upstream sequence
CCAGGATTATTAATACAGACAAGAACATTTATCATTTCAGAGCAATTTAGGGCCAGGAAGGCAACGAAATCCCACTCTGAAATGAAAGCACAAGCATGGC
Downstream sequence
CTTAGCAGAATATTCTACCCATTCACATTTGGAAGGTAATAAACTTGTTCATGTCTTAAGAGGTATATGGTCTGGAGTTGGGGGCACTGATGAGCTGGCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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