Basic Information
VIS ID
TVIS44033434
Fusion event
HTLV-1-CGRRF1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
54074770/54538302 (Hg38)
End
54074770/54538302 (Hg38)
Orient
+
Location type
Intronic
Target gene
CGRRF1
Nearest miRNA
hsa-mir-208a/Upstream/589818; hsa-mir-1185-1/Downstream/339811;
Nearest TSS
ENST00000550708/Upstream/580; ENST00000554587/Downstream/28795;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/28025, chr14-CpG: 278/Downstream/26806
Upstream sequence
CTGTGTTGTTTGCCAGAATGGGACTGTGAACTGGGTACTCTTACCATGCAGACACACATGCCTGTGTGATGGCTGTGTGAAGTATTTTCAGCAGTGCCCA
Downstream sequence
ATGTGCAGGCAGTTTGTTCAGGAATCTTTTGCACTTTGCAGTCAAAAAGAGCAAGATAAAGACAAACCGAAGACTCTTTGAAGACATCGTAACACTGAAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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