Basic Information
VIS ID
TVIS44033438
Fusion event
HTLV-1-CHMP1A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
88244369/89650460 (Hg38)
End
88244369/89650460 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHMP1A
Nearest miRNA
hsa-mir-11401/Upstream/934123;
Nearest TSS
ENST00000527434/Upstream/867; ENST00000568929/Downstream/7145;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2018, chr16-CpG: 150/Downstream/6324
Upstream sequence
TCTGCCCTGTCCATCATGGGGAGGGGACCCCTCCTGGAGAGGCACCCCTGTAAGCCTCCAGCCCCATCCCACCCCATGGGGCAGGGGCATCATGACTCTG
Downstream sequence
CCCAGACCCTGATGCCCTAGACACCAGCTCTGTAGGGAGGAGAGAGCTAAAAATGATAGGATCCgctgggcccagtggctcatgcctgtaatcccagcac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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