Basic Information
VIS ID
TVIS44033448
Fusion event
HTLV-1-LINC00907 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
q12.3
Reference genome
NCBI36/hg18
Start
38253647/42419684 (Hg38)
End
38253647/42419684 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00907
Nearest miRNA
hsa-mir-1-2/Upstream/2742905; hsa-mir-122/Downstream/2550398;
Nearest TSS
ENST00000575820/Upstream/193720; ENST00000591940/Downstream/554411;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/2577819, chr18-CpG: 180/Downstream/2259334
Upstream sequence
aaagtccttcccTAATTGAAATGTCTCTTTTAAAATCTTGTATGTTTGAGATGTTCTCTAAATGTCTTAATGTTTTTTCATCTTTTTAAAAATATCTACT
Downstream sequence
GATtatatatatatatatatatatatatatatatataAAatggtaaatggggtacccatcaccacaagcaattatgctttgtgttacaaacaacccaatt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate