Basic Information
VIS ID
TVIS44033451
Fusion event
HTLV-1-LOC105369839 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
72004928/73324881 (Hg38)
End
72004928/73324881 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369839
Nearest miRNA
hsa-let-7i/Upstream/3740058; hsa-mir-1178/Downstream/6094376;
Nearest TSS
ENST00000382841/Upstream/118046; ENST00000551387/Downstream/435808;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1051110, chr12-CpG: 38/Downstream/1212831
Upstream sequence
agagacataaaaaaccattcaaatgatcaacaaatccaggagcagatattttgaaaaagtccataaaataaatagacaattagctagactaacaaagaag
Downstream sequence
aaaagggagaagattcaaataaagtcaatcagaaatgatagggggatattaccactgaccccacagaaatgcaaacaaccattagagaatattatgaata
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate