Basic Information
VIS ID
TVIS44033478
Fusion event
HTLV-1-LOC105371965 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
NCBI36/hg18
Start
3454671/3464673 (Hg38)
End
3454671/3464673 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371965
Nearest miRNA
hsa-mir-8078/Upstream/3352334; hsa-mir-1-2/Downstream/420680;
Nearest TSS
ENST00000575820/Upstream/9259; ENST00000581029/Downstream/1577;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/12311, chr18-CpG: 52/Downstream/34270
Upstream sequence
attacaagtgtgagccactgtgcctagccTGATTTTCATTTTGAAATTTGATTTACTTGAATGATTCTGTGAAAAGCCCAAGTGTATTACATTAGTCAAC
Downstream sequence
ATCTTTTCCCAGCTGAGCGTGGGGGCTTaccagtctgggcagcatagcgagatcttgtctctacaaaaaaattaaaaattagccaggcatggtggtgtgc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate