Basic Information
VIS ID
TVIS44033485
Fusion event
HTLV-1-C5orf66 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
134582843/135219254 (Hg38)
End
134582843/135219254 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
C5orf66
Nearest miRNA
hsa-mir-10397/Upstream/993402; hsa-mir-103a-1/Downstream/583731;
Nearest TSS
ENST00000502646/Upstream/88005; ENST00000554670/Downstream/28561;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/27525, chr5-CpG: 31/Downstream/107777
Upstream sequence
CTCAGTGAGGGTTTCAGTGGATAAGGATTTCATATTTCACTCTTCCATTTTTCGTATTTAAATTTGCTTTACTCTCCAGTTTGACTTTCCACTGACCCTT
Downstream sequence
GAAGAATTGGCGTATTTCAAGGAGGGGGAAAAGATCTCATTATAGGAAATGAGAAAAATGGAGCAGAGTTTTAAAACTTTTAATGACTAAAACACAGTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate