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TVIS44033490
Basic Information
VIS ID
TVIS44033490
Fusion event
HTLV-1-SH3BP4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q37.2
Reference genome
NCBI36/hg18
Start
235596789/235023406 (Hg38)
End
235596789/235023406 (Hg38)
Orient
+
Location type
Intronic
Target gene
SH3BP4
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-375
;
hsa-mir-215-5p
;
hsa-mir-7-5p
;
hsa-mir-192-5p
;
hsa-mir-106b-3p
;
hsa-mir-193b-3p
;
hsa-mir-93-5p
;
hsa-mir-203a-3p
;
hsa-mir-520g-3p
;
hsa-mir-518a-5p
;
hsa-mir-520h
;
hsa-mir-527
;
hsa-mir-574-5p
;
hsa-mir-595
;
hsa-mir-653-5p
;
hsa-mir-3659
;
hsa-mir-4656
;
hsa-mir-4658
;
hsa-mir-6790-5p
;
hsa-mir-8077
;
hsa-mir-525-5p
;
hsa-mir-520a-5p
;
hsa-mir-4722-5p
;
hsa-mir-761
;
hsa-mir-3619-5p
;
hsa-mir-214-3p
;
hsa-mir-6501-3p
;
hsa-mir-6165
;
hsa-mir-6838-5p
;
hsa-mir-497-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-15a-5p
;
hsa-mir-2278
;
hsa-mir-508-5p
;
hsa-mir-7108-5p
;
hsa-mir-644a
;
hsa-mir-663b
;
hsa-mir-4743-5p
Nearest miRNA
hsa-mir-10b/Upstream/2472833; hsa-mir-149/Downstream/2487525;
Nearest TSS
ENST00000437798/Upstream/28566;
ENST00000449362/Downstream/65180;
Nearest CpG islands
None/Target,
chr2-CpG: 135/Upstream/70334
,
chr2-CpG: 27/Downstream/19402
Upstream sequence
gaggctgaggcgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatagtgaaaccctgtctgtatttaaaatacaaaaaaataactgg
Downstream sequence
acatggtggtggagacctgtaatcccagctacttgggaggctgaggcaggaaattgcctgaacccgggtggtgggggttgcagtgagccgagatcgcatc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co15
Sample type
Nontumor
Age
64
Gender
Male
CpG Island Information
×
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