Basic Information
VIS ID
TVIS44033494
Fusion event
HTLV-1-PMFBP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
70723756/72132356 (Hg38)
End
70723756/72132356 (Hg38)
Orient
+
Location type
Intronic
Target gene
PMFBP1
Nearest miRNA
hsa-mir-1225/Upstream/2101934; hsa-mir-11401/Downstream/4736580;
Nearest TSS
ENST00000527434/Upstream/7503; ENST00000564508/Downstream/18296;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/38914, chr16-CpG: 51/Downstream/532288
Upstream sequence
gtacccaAGGAAGAAGCTATTGGTGACCTCTGAGAAAGCAGGCTCTGTGGAGGGACAAGGACATCATCCACAGTGCAAGCTGCACAGAAGAGAAATGTAT
Downstream sequence
TTGGGGGCAAAAAGGCGAAAGGGAATAAAAAGCCAGGGAAGGGTGAAGTGAATTGTGTGATGAGGGCCTGAAGAAGATGGAGAGGATTGTGGTGCAAAGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate