Basic Information
VIS ID
TVIS44033496
Fusion event
HTLV-1-LINC00114 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
39039425/38745631 (Hg38)
End
39039425/38745631 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00114
Nearest miRNA
hsa-let-7c/Upstream/3024823; hsa-mir-3197/Downstream/701379;
Nearest TSS
ENST00000624081/Upstream/3114; ENST00000432278/Downstream/1829;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/83890, chr21-CpG: 151/Downstream/59447
Upstream sequence
aatcccagcactttgggaggccgaggcaggtggattgattacctaaggtagggagttcaagaccagccttgccaacatggtgaaactccgtctctactaa
Downstream sequence
aactacaaaattcgtccggcgtggtggtgcatacccatagtcccagctactcaggaggctgaggcaggagaatcgcttgaatccgggaggcagagtttgc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate