Basic Information
VIS ID
TVIS44033502
Fusion event
HTLV-1-MAEA integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
NCBI36/hg18
Start
1318115/1334327 (Hg38)
End
1318115/1334327 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAEA
miRNAs that regulate target gene
hsa-mir-455-3p
Nearest miRNA
hsa-mir-571/Upstream/984075; hsa-mir-12113/Downstream/652057;
Nearest TSS
ENST00000502981/Upstream/1766; ENST00000505716/Downstream/12939;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/5240, chr4-CpG: 95/Downstream/4226
Upstream sequence
AAAACCTCCTGGAGTTGACAGTTTGTTCTCTGAGCCTGGCACCAGTCTCTGTCAGAGGCCGGGGTGTTTCCCGGCAGCCCCCACCTGCCACCCTGTAGGG
Downstream sequence
ACTGCAAAGCCCTGGGCAGTCCCAGACCTGCTGCCTTCTGAAAGCTGCTGGAAGCTCAGCCTGAATTCTCCTGGTTCTCAGGCGTTTGGGGCATCTCATA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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