Basic Information
VIS ID
TVIS44033525
Fusion event
HTLV-1-PSTPIP1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q24.3
Reference genome
NCBI36/hg18
Start
75076286/76996890 (Hg38)
End
75076286/76996890 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSTPIP1
miRNAs that regulate target gene
hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p
Nearest miRNA
hsa-mir-10393/Upstream/1234575; hsa-mir-11181/Downstream/2212898;
Nearest TSS
ENST00000557528/Upstream/1316; ENST00000559859/Downstream/18921;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/64765, chr15-CpG: 24/Downstream/30919
Upstream sequence
GGAGGCAGAGCTGCCTCAGCCCATCCGGAGGACCAGGCACCAGGATGCTCAGGGCCCAGGCTGGCAGCTGGAGCCCTGGGGGATGGGGGATGTGAGTCAC
Downstream sequence
CACCTAGCTGCCCTGCCTTGGTGTGCAAAGTTGGGGGAAGGGGTAGGGCCTGGAAACCCAGGCCACTCTGTAGCCCAGGGCAGGCCAGGACCCCTTGACT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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