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TVIS44033554
Basic Information
VIS ID
TVIS44033554
Fusion event
HTLV-1-LOC107985080 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
NCBI36/hg18
Start
14240845/14396803 (Hg38)
End
14240845/14396803 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA17A
Target gene
LOC107985080
Nearest miRNA
hsa-mir-1253/Upstream/853157; hsa-mir-10226/Downstream/854824;
Nearest TSS
ENST00000595228/Upstream/22664;
ENST00000455092/Downstream/328926;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/51399
,
chr17-CpG: 77/Downstream/863810
Upstream sequence
tatagcttgctgactaatgccgctctacaactgtttgttactggttcccaaggagataagAAGCTTACACCAGAATGTAAACCAGCTCCAAAAaagcaca
Downstream sequence
ctatttagctcagttgatattttttcatagcaagactttcttaatgaaggaagcagtgcatagatttacaatctggtgtaatctccttaTCATCTCACAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co15
Sample type
Nontumor
Age
64
Gender
Male
CpG Island Information
×
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