Basic Information
VIS ID
TVIS44033562
Fusion event
HTLV-1-LOC105372716 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
q13.33
Reference genome
NCBI36/hg18
Start
60895926/62794129 (Hg38)
End
60895926/62794129 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372716
Nearest miRNA
hsa-mir-1-1/Upstream/229116; hsa-mir-124-3/Downstream/384371;
Nearest TSS
ENST00000382410/Upstream/18717; ENST00000370487/Downstream/2324;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/21888, chr20-CpG: 51/Downstream/1215
Upstream sequence
GGCACCCTGCAGAGCAACCaaccctcaccgagatccccagggaaggggctgttgttggcccattgtacggaggagggcactgaaccctcaagaggctcag
Downstream sequence
ggcctcgcccggtcacacagctggaaggcgccagagccaggaaagggacccggaagcccgacccggagcctacacccGCAGAGGCGAAAACATCTGCGTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate