Basic Information
VIS ID
TVIS44033565
Fusion event
HTLV-1-IL12A-AS1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q25.33
Reference genome
NCBI36/hg18
Start
161205003/160004522 (Hg38)
End
161205003/160004522 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
IL12A-AS1
Nearest miRNA
hsa-let-7g/Upstream/721788; hsa-mir-1224/Downstream/400066;
Nearest TSS
ENST00000440867/Upstream/15568; ENST00000471921/Downstream/11339;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15298, chr3-CpG: 35/Downstream/34323
Upstream sequence
cacaatctcagctcactacaacctccgcctcccgggttcaagcgattctcctaactcaacctcccaaatagctaggattacaggcgcctgccaccatgcc
Downstream sequence
cagctaatttttgtatttttagtagagacagggttttgccatattggccaggctggcctcgaactcctgacctcatgatccgcccgccttggcctcccaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate