Basic Information
VIS ID
TVIS44033602
Fusion event
HTLV-1-PSKH2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
NCBI36/hg18
Start
87148692/86067347 (Hg38)
End
87148692/86067347 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSKH2
Nearest miRNA
hsa-mir-12123/Upstream/5825874; hsa-mir-10400/Downstream/5138138;
Nearest TSS
ENST00000518652/Upstream/80024; ENST00000523635/Downstream/2350;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/238899, chr8-CpG: 40/Downstream/2077
Upstream sequence
ATTCAATTTGTCCCATAACAAATTCTTATAGCTACAGCCTTGCTCGTGAGTCCTCAACTGCCATGAATGGTGACCAACTTTATGATTTGCGTGGCTATAC
Downstream sequence
CTTGTAAAGTGCCTAGCACAGAGGAGTAGCAATAAACACTGAACAAAAGAATCATTCACTGAATACATATTATTCCTGAATCATCATATATATTTTGCAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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