Basic Information
VIS ID
TVIS44033604
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
NCBI36/hg18
Start
60173662/59935402 (Hg38)
End
60173662/59935402 (Hg38)
Orient
-
Fragile sites / regions
FRA1B
Nearest miRNA
hsa-mir-12136/Upstream/202106; hsa-mir-101-1/Downstream/1910673;
Nearest TSS
ENST00000473358/Upstream/8612; ENST00000456878/Downstream/73443;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8491, chr1-CpG: 23/Downstream/138241
Nearby gene
CYP2J2(-8604) ;
Upstream sequence
gacatataagtttggagacctaatgtacagaatggtgactatagttaacagtgcattgtgtacttgaaatttggttaagagggtagatcttaagtattct
Downstream sequence
caccacacacatgcacatgcatgtaactatatgaggtgatgaatatgataagcagcttgatatcagtaatcacttcataatgtatacctatatcaaagca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate