Basic Information
VIS ID
TVIS44033611
Fusion event
HTLV-1-POU1F1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
p11.2
Reference genome
End
87402646/87270806 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/44529; hsa-mir-12124/Downstream/9089158;
Upstream sequence
ACTTCTCAGAAAATTCAGATGACATAATAAGGTTTCTATTGTGTACTTTATACATTTGTCTCTTATTTACCTTTTCTCTCTTATTTCTGAATTGCTGTAT
Downstream sequence
TTTGTAACTCAATTTATGCAGCTTTACTGGGGATAAAGTCAGGAGAGTTCAGATTCTCTAAGATCTAATCTCTCATGAAGCAAATGCTAATACTGAATTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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