Basic Information
VIS ID
TVIS44033613
Fusion event
HTLV-1-FTH1P21 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
NCBI36/hg18
Start
157147690/156007088 (Hg38)
End
157147690/156007088 (Hg38)
Orient
+
Location type
Intronic
Target gene
FTH1P21
Nearest miRNA
hsa-mir-12113/Upstream/3470572; hsa-mir-1305/Downstream/3121714;
Nearest TSS
ENST00000502981/Upstream/53171; ENST00000510753/Downstream/578891;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/53157, chr4-CpG: 72/Downstream/964456
Upstream sequence
CACCCCCCGAGACAGTGACAATGAGAGCTAAGCCTTAGGCTAATTTCCCCATAGCCATGGGGTAACCTCCCTGGTCACCAAGGCAGTGCATGCATGCTGG
Downstream sequence
GGTTTCCTTTACCTTTTTTTGTAAGTTGTACCAAAACATCCACTTAAGTTCTTTATCAGTTTCATTCCTTCAAATAAAAAAAATTTGGTACCATCCCCCC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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