Basic Information
VIS ID
TVIS44033621
Fusion event
HTLV-1-SYN1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
p11.23
Reference genome
NCBI36/hg18
Start
47355035/47610692 (Hg38)
End
47355035/47610692 (Hg38)
Orient
-
Location type
Intronic
Target gene
SYN1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1587/Upstream/23187; hsa-let-7f-2/Downstream/2392456;
Nearest TSS
ENST00000429181/Upstream/3678; ENST00000591832/Downstream/8695;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/35967, chrX-CpG: 93/Downstream/8579
Upstream sequence
acgtattggcaggagctgggaaggtatgcatgagactggatcctgaggacaatgggcgaaggaggtagaacaggaagttggtgtgctctcccaggatacg
Downstream sequence
gaacttaaaaccctggcgaggactctaggaagtgttactaacacactggtatttggaaacctggagtaaacaatggcccacactaagtgaagcagaactt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate