Basic Information
VIS ID
TVIS44033657
Fusion event
HTLV-1-ARMC4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
28188349/27859414 (Hg38)
End
28188349/27859414 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARMC4
Nearest miRNA
hsa-mir-1265/Upstream/3583633; hsa-mir-107/Downstream/429844;
Nearest TSS
ENST00000439456/Upstream/23251; ENST00000425137/Downstream/122490;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/113132, chr10-CpG: 67/Downstream/138975
Upstream sequence
ATGCCATAAAAACAGATTTATAATGGAAAGGTTGACACATTCAAACATATATTGAGTTTAATTTCAGAAAAATTAACATCATATTCTTCTACTGGAATAG
Downstream sequence
ATTTCAAGAATTAATTAAAATAATTGCCTCAAAAATTGCCAATTGGTATTTTAAGAGTACTATTCCTCCTAAGATGTTTCATATCTAGCATATCTAGATT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate