Basic Information
VIS ID
TVIS44033672
Fusion event
HTLV-1-LINC00348 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q21.33
Reference genome
NCBI36/hg18
Start
70522493/71050360 (Hg38)
End
70522493/71050360 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
LINC00348
Nearest miRNA
hsa-mir-1297/Upstream/4832036; hsa-mir-1267/Downstream/6647652;
Nearest TSS
ENST00000623511/Upstream/35219; ENST00000618209/Downstream/816409;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/942273, chr13-CpG: 62/Downstream/814870
Upstream sequence
GGATTCAGATTATTGTGCAGAACTAAATTGTGTTTCACAAAAGAAGGCGTATTTAAATGGATACATCCTTTATTACAGTAAAGATAAAAAATTTAACTTA
Downstream sequence
TCAGAATTTTGAAAAAGGAGTTGTTACAATAGCTAACTCTGAACTGCTTCTAAAACCTTACTGCAAGTTATTATAGCTAAACCAATAACAAAAGAAAACA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate