Basic Information
VIS ID
TVIS44033679
Fusion event
HTLV-1-LOC105376442 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
NCBI36/hg18
Start
20927136/20598201 (Hg38)
End
20927136/20598201 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376442
Nearest miRNA
hsa-mir-1265/Upstream/46155; hsa-mir-107/Downstream/898361;
Nearest TSS
ENST00000439456/Upstream/506417; ENST00000417845/Downstream/217624;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/780184, chr10-CpG: 149/Downstream/574998
Upstream sequence
GGAAAACTACCATATTACCATTAATAAGTCCATTATAAATTATGAGCTAATATTATTTAAAACATAGATGAAAATAAAAAATTCAAAACTTTTGAAATGG
Downstream sequence
GAAACAATCATGAAATTTCTGTCCAGGCTATTTTCTATGACATTATAAAACTAAATAGCCCCTCCTGAATTTAACATTACTATTTTGTCTTAGGCTTTTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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