Basic Information
VIS ID
TVIS44033687
Fusion event
HTLV-1-LINC00536 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
117399267/116317848 (Hg38)
End
117399267/116317848 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00536
Nearest miRNA
hsa-mir-12123/Upstream/3674265; hsa-mir-10400/Downstream/556880;
Nearest TSS
ENST00000518652/Upstream/508175; ENST00000519443/Downstream/7211;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/648452, chr8-CpG: 21/Downstream/437843
Upstream sequence
atacgcctcaaaataataggagccatttatgacaaacccacagccagtatcatactgaatgggcaaaagctagaagcattgtctttgaaaaatggcacaa
Downstream sequence
gacacggatgccctctctcactactcctattcaacatagtattggaagtcctggccaaggcaatcagacaagagaaaaaaataaagcatattctaatagg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate