Basic Information
VIS ID
TVIS44033694
Fusion event
HTLV-1-LOC107984456 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
NCBI36/hg18
Start
131230095/132179597 (Hg38)
End
131230095/132179597 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
LOC107984456
Nearest miRNA
hsa-let-7i/Upstream/3885419; hsa-mir-6763/Downstream/402400;
Nearest TSS
ENST00000382841/Upstream/9774; ENST00000535242/Downstream/10098;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/394, chr12-CpG: 129/Downstream/9548
Upstream sequence
gccccaaagcaaggtcccgatccaagtagctgccgttattGCTAATAGTGGTCCCAGCGGAGCCACAGTTGCTGAACGGTCCTGCAGAGATGTCCCCTTG
Downstream sequence
GGTACAGGGCCCCCAGGGAGGAGCTGGGGACAGAAGGCAAAGCAGCTGGATCCACCCATGCCTGCAGCTTGCTCTTTGCTTAACTGGTTGTTAGAGTTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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