Basic Information
VIS ID
TVIS44033696
Fusion event
HTLV-1-LOC101927964 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
NCBI36/hg18
Start
4099666/4067474 (Hg38)
End
4099666/4067474 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927964
Nearest miRNA
hsa-mir-5699/Upstream/76215; hsa-mir-107/Downstream/2084722;
Nearest TSS
ENST00000439456/Upstream/15748; ENST00000434902/Downstream/176169;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/281540, chr10-CpG: 60/Downstream/758459
Upstream sequence
CCACGAGGAGTGAAGGAGCCCAAGGAGGGGGTCACAGGTGTTGCTGTGTAGGAGTTTATTCCCTGCCTTGCCTAGGAATTTATTCCTGTAAATCCATTTC
Downstream sequence
CTTACTCACTTTTAAAATTCACCATTTCTTCATATGCTTGTCACTGTTACTACATTTGGGTCACTCTTCTGTGGCCCTCGAGGACTTTGGGGACACTCGG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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