Basic Information
VIS ID
TVIS44033700
Fusion event
HTLV-1-LINC02234 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q15
Reference genome
NCBI36/hg18
Start
97218802/97857342 (Hg38)
End
97218802/97857342 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5B
Target gene
LINC02234
Nearest miRNA
hsa-mir-10397/Upstream/1778130; hsa-mir-103a-1/Downstream/2959140;
Nearest TSS
ENST00000502646/Upstream/352646; ENST00000502324/Downstream/24078;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/673401, chr5-CpG: 135/Downstream/911532
Upstream sequence
caagagacccatctcacatgcagtgacacacataggctcaaaataaagaaatggaggaaaatctaatgagcagatggaaaacagaaaaaaacaagggttg
Downstream sequence
cattcctagtttctggaaataaaacaaaacagactttaaaccaacaaagataaaaaaaaaaagacaaagaagggaattacataatggtaaagtgttcaac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate