Basic Information
VIS ID
TVIS44033702
Fusion event
HTLV-1-ACBD6 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
178584866/180349108 (Hg38)
End
178584866/180349108 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACBD6
miRNAs that regulate target gene
hsa-mir-193b-3p
Nearest miRNA
hsa-mir-101-1/Upstream/545083; hsa-mir-1182/Downstream/89206;
Nearest TSS
ENST00000473358/Upstream/72884; ENST00000442621/Downstream/64280;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/113268, chr1-CpG: 92/Downstream/153082
Upstream sequence
ACAGCATTTATAGGCGAAGGGGCAATTTTTTCCTGAGTTTTTTTTAACCCATTTTAGGATGTTGCGAGAGCAGTATCACTTGTTTAATATAACTTTGTAT
Downstream sequence
CCTTTATTTAACTTAATTTTTCTTATAAAGTCAGCTTTTATTTACTTATaaaaaaatagaacgcttcacgaacttgcatgtcaggggccatgctaatctt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate