Basic Information
VIS ID
TVIS44033718
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
183830155/185594400 (Hg38)
End
183830155/185594400 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01350 ; LOC107985239
Nearest miRNA
hsa-mir-101-1/Upstream/5156010; hsa-mir-1182/Downstream/7121928;
Nearest TSS
ENST00000473358/Upstream/28769; ENST00000569292/Downstream/34088;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/277166, chr1-CpG: 69/Downstream/780592
Upstream sequence
AGCCTGCCACTTGCTCAGCTGTACCTTGGCATATATCCCTCTGTTTTGCGGTTCTTTGTGATTGTCCCTTTCAGATTAGAAGTGCTTTATAATAAATTGG
Downstream sequence
TAACTGTGCTTATTTGGCTGTTGAAAAGGGAGTCCTTTTAAAAAGGAAACTTAGCCCTTAAAacacatacacacacacacacacacacacacacacacac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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