Basic Information
VIS ID
TVIS44033724
Fusion event
HTLV-1-B3GLCT integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.3
Reference genome
NCBI36/hg18
Start
30676592/31204455 (Hg38)
End
30676592/31204455 (Hg38)
Orient
+
Location type
Intronic
Target gene
B3GLCT
Nearest miRNA
hsa-mir-2276/Upstream/7041951; hsa-mir-1267/Downstream/8459579;
Nearest TSS
ENST00000623511/Upstream/4519; ENST00000461652/Downstream/55952;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3558, chr13-CpG: 70/Downstream/642038
Upstream sequence
catcgaacaattaattatcggatccaaaatgccaacagtggcaagcttgagaaactgtggggtaagggtcaaggaaggcttcctagaggatgtgacgtta
Downstream sequence
gagctcagacccgaaagggaagcagaaatcaggtaagtgggtggcagagcttggtggtgaaggagccaagtggagaaaggacggaggactgaagggctgg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate