Basic Information
VIS ID
TVIS44033725
Fusion event
HTLV-1-ABCA13 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p12.3
Reference genome
NCBI36/hg18
Start
48273944/48263801 (Hg38)
End
48273944/48263801 (Hg38)
Orient
+
Location type
Intronic
Target gene
ABCA13
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-1183/Upstream/3382001; hsa-mir-10399/Downstream/8691984;
Nearest TSS
ENST00000635602/Upstream/92341; ENST00000484268/Downstream/15475;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/173437, chr7-CpG: 37/Downstream/190963
Upstream sequence
GAAGATTTTATTTACCTATTTTGTTTAAAAAATTATTTGATACTGTTGAGCTTTTTAAATTttttaatttttatggatacatagtaggcatgtatattta
Downstream sequence
tgagtaacatgagatattttcatacaggcatgcaatgtgtagtaatcacatcCATGttgacatatacatatatccataaaactgtaatcacaattaagac
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate