Basic Information
VIS ID
TVIS44033729
Fusion event
HTLV-1-LOC105369168 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
p14
Reference genome
NCBI36/hg18
Start
66054616/65973978 (Hg38)
End
66054616/65973978 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105369168
Nearest miRNA
hsa-mir-1301/Upstream/1448413; hsa-mir-10b/Downstream/384271;
Nearest TSS
ENST00000437798/Upstream/333801; ENST00000412313/Downstream/262235;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/537233, chr2-CpG: 102/Downstream/451758
Upstream sequence
gaaaaccctgatggatcacctgagactagtcatcaagtgctaggagtattactgtggaaagggtgtttgccagttttctcttctgtcttactgaagaTGA
Downstream sequence
GGAACCTTACATCAGAAGGAAATACAGGTTTGCTTAAAGAAAGAGCTCTCAGGTAAGATCACATACACAACCAAGTGTTTAAAATACACTAGATGCTCTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate