Basic Information
VIS ID
TVIS44033750
Fusion event
HTLV-1-CHODL integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
NCBI36/hg18
Start
18306589/18012401 (Hg38)
End
18306589/18012401 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHODL
Nearest miRNA
hsa-let-7c/Upstream/1422076; hsa-mir-155/Downstream/673689;
Nearest TSS
ENST00000624081/Upstream/95061; ENST00000543733/Downstream/102503;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/192661, chr21-CpG: 77/Downstream/232380
Upstream sequence
TTTACTTTTAAGTTCTACTGACAATCTCTATGTCAGGCCTTTCTTTTGTCCTTAGATTATTGCAAGAGCCTCTGACTTTGTCTGAATGGTAATCTAGATT
Downstream sequence
AATATTTCCAATGCATTCCTATGAGTCTGCCCGTTGCCAGCTGAAAAATGGTAAAGAATAATCTTAAAGCACTCCAAATTGCTACTATTAATGTATATAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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