Basic Information
VIS ID
TVIS44033765
Fusion event
HTLV-1-LINC01423 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr21
Cytoband
q22.2
Reference genome
End
38626265/38332473 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7c/Upstream/2611665; hsa-mir-3197/Downstream/1114537;
Upstream sequence
tttctataaacacaggttgggtaatttataaagaaaagaaatatatgctcacagttctgaaggctgggaagtccaatatcaagatgctggcatctggtaa
Downstream sequence
gggcctttgtggtgtgtcacccccatggcagaaggtggaaggcaagacagcatgagagagcaagagagcaagagggggtcaaattcactagtacaagcag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate