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TVIS44033774
Basic Information
VIS ID
TVIS44033774
Fusion event
HTLV-1-THSD4 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
NCBI36/hg18
Start
69747495/71668102 (Hg38)
End
69747495/71668102 (Hg38)
Orient
-
Location type
Intronic
Target gene
THSD4
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-5589-5p
;
hsa-mir-4731-5p
;
hsa-mir-1909-5p
;
hsa-mir-6506-5p
;
hsa-mir-619-5p
;
hsa-mir-512-3p
;
hsa-mir-6768-3p
;
hsa-mir-4484
;
hsa-mir-548an
;
hsa-mir-4665-5p
;
hsa-mir-4472
;
hsa-mir-1275
;
hsa-mir-4447
;
hsa-mir-5010-5p
;
hsa-mir-4525
;
hsa-mir-7111-5p
;
hsa-mir-6870-5p
;
hsa-mir-5698
;
hsa-mir-4723-5p
;
hsa-mir-625-5p
;
hsa-mir-6825-5p
;
hsa-mir-7160-5p
;
hsa-mir-6853-5p
;
hsa-mir-6087
;
hsa-mir-4649-3p
;
hsa-mir-1827
;
hsa-mir-670-5p
;
hsa-mir-6848-5p
;
hsa-mir-6846-5p
;
hsa-mir-4697-5p
;
hsa-mir-4488
;
hsa-mir-1237-5p
;
hsa-mir-6816-5p
;
hsa-mir-3196
;
hsa-mir-3180-3p
;
hsa-mir-3180
;
hsa-mir-6787-5p
;
hsa-mir-663a
;
hsa-mir-6882-3p
;
hsa-mir-1908-5p
;
hsa-mir-4749-5p
;
hsa-mir-4706
;
hsa-mir-4312
;
hsa-mir-637
;
hsa-mir-6852-5p
;
hsa-mir-6791-5p
;
hsa-mir-4308
;
hsa-mir-4292
;
hsa-mir-4438
;
hsa-mir-3925-3p
;
hsa-mir-4709-3p
;
hsa-mir-665
;
hsa-mir-6863
;
hsa-mir-766-3p
;
hsa-mir-873-5p
Nearest miRNA
hsa-mir-10393/Upstream/1588634; hsa-mir-11181/Downstream/919115;
Nearest TSS
ENST00000557528/Upstream/7572;
ENST00000621098/Downstream/124536;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/452745
,
chr15-CpG: 18/Downstream/143749
Upstream sequence
atcttttcatattaatacatataagcctatgttattgatttttttttagtgcagagtattctgtacagtggatgtaccattatttatttaggtacttccc
Downstream sequence
tactgagggatgtttagattgcctctagttttctaacattacaaataatactTTAgaattttggttcaagatggcagactgagcacatgagcttttcttc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Sample Information
×
Sample name
Co16
Sample type
Nontumor
Age
51
Gender
Male
CpG Island Information
×
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