Basic Information
VIS ID
TVIS44033785
Fusion event
HTLV-1-EYA2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
NCBI36/hg18
Start
45093128/47031082 (Hg38)
End
45093128/47031082 (Hg38)
Orient
-
Location type
Intronic
Target gene
EYA2
miRNAs that regulate target gene
hsa-mir-30a-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/1325902; hsa-mir-1-1/Downstream/135885;
Nearest TSS
ENST00000382410/Upstream/29622; ENST00000475856/Downstream/58157;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/135701, chr20-CpG: 38/Downstream/207828
Upstream sequence
tctggaggccctgtttccaaatacagtcacaattgggggttacagcttcaacataacgaatctgggggccacaattcagTTGCAACACGCAGTGGGTAAG
Downstream sequence
GAAATGAGCAAATGACAAGATGATGTCAACTGTGATGAGTGCTCCAAGGAGAATAAACAGGGAGATGTAACAAAGAGAAACCAGGAAGGACGCCAGGCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate