Basic Information
VIS ID
TVIS44033816
Fusion event
HTLV-1-VRK2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
p16.1
Reference genome
End
58150979/58070340 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1301/Upstream/2069545; hsa-mir-10b/Downstream/2317022;
Upstream sequence
agtcttggtgtgttacccatgctggtcttgaactcctaggctcaagtgatcctcccacatcaacctctcaagtagttggggttacagacgtgcaccactg
Downstream sequence
tgcccagGTtttatgttatatagttttatgggttttggtatatgcataatatcatgtgtccaccattacagtctcatacagactaatttcactgccttga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate