Basic Information
VIS ID
TVIS44033822
Fusion event
HTLV-1-HCRTR2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
NCBI36/hg18
Start
55103160/55130403 (Hg38)
End
55103160/55130403 (Hg38)
Orient
-
Location type
Intronic
Target gene
HCRTR2
Nearest miRNA
hsa-mir-10398/Upstream/1853332; hsa-mir-10524/Downstream/2259729;
Nearest TSS
ENST00000381078/Upstream/23943; ENST00000370862/Downstream/43849;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/283168, chr6-CpG: 15/Downstream/43969
Upstream sequence
agtattccccatgcgatgaatgttaccacaatgtagtaacttttaccagttggagaattggtaaccttttttttgttgttttgttttttttttcattttc
Downstream sequence
ttctccttcattctttaaaagtaatccaaccagtttctataaatttcatctccaatatattcctatttctttcaaagctatcatcacctgtcacatgggc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate