Basic Information
VIS ID
TVIS44033826
Fusion event
HTLV-1-SCFD2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
NCBI36/hg18
Start
53808285/53247361 (Hg38)
End
53808285/53247361 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
SCFD2
Nearest miRNA
hsa-mir-12113/Upstream/534614; hsa-mir-1243/Downstream/7675258;
Nearest TSS
ENST00000502981/Upstream/301672; ENST00000510668/Downstream/118580;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/384528, chr4-CpG: 43/Downstream/118180
Upstream sequence
tgagtttgtgcagaaaatggaacacttgtacactgtaggtgggagtgtaaattcgttcacgcagtatggagattcctcaaagagctaaaaactgaactac
Downstream sequence
cattcgacctaggaatcccattactaggtatgtacccaaaaaaatataaattgttctatcataaaaacacatgcacatgtatgttcattgcactattatt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate