VISDB - VIS Detail

Expression analysis of TCGA samples

Basic Information

VIS ID

TVIS45000018

Fusion event

XMRV-APPBP2 integration

Validated

Yes

Detection method

Nested PCR, nested RT-PCR, or quantitative RT-PCR

Data source

Curated

Sample type

Tumor

Disease

Prostate cancer (PC)

Quality evaluation

Normal

Reported year

2008

PubMed ID

18684813

Virus Sequence

Virus name

XMRV

Reference genome

Not given

Host Sequence

Chromosome

chr17

Cytoband

q23.2

Reference genome

NCBI36/hg18

Start

55946474

End

(Hg38)

Target gene

APPBP2

miRNAs that regulate target gene

hsa-mir-148a-3p ; hsa-mir-4452 ; hsa-mir-670-5p ; hsa-mir-513a-5p ; hsa-mir-2052 ; hsa-mir-6128 ; hsa-mir-6791-5p ; hsa-mir-4308 ; hsa-mir-4292 ; hsa-mir-3681-3p ; hsa-mir-3938 ; hsa-mir-216a-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-128-3p ; hsa-mir-144-3p ; hsa-mir-4497

Nearest CpG islands

None/Target, None/Upstream, None/Downstream

Reference

im, S., et al. Fidelity of target site duplication and sequence preference during integration of xenotropic murine leukemia virus-related virus. PLoS One,2010, 5(4): e10255.