VISDB Viral Integration Site DataBase

VIS ID

TVIS45000019

Fusion event

XMRV-APP integration

Validated

Yes

Detection method

Nested PCR, nested RT-PCR, or quantitative RT-PCR

Data source

Curated

Sample type

Disease

Prostate cancer (PC)

Quality evaluation

Normal

Reported year

2008

PubMed ID

Virus name

XMRV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.4

Reference genome

Start

End

(Hg38)

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-mir-101-3p ; hsa-mir-520c-3p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-15a-5p ; hsa-mir-130a-3p ; hsa-let-7d-5p ; hsa-let-7a-5p ; hsa-mir-16-5p ; hsa-mir-532-3p ; hsa-mir-500a-5p ; hsa-mir-484 ; hsa-mir-423-3p ; hsa-mir-328-3p ; hsa-mir-222-3p ; hsa-mir-196a-5p ; hsa-mir-1260b ; hsa-mir-3620-3p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-6504-3p ; hsa-mir-455-3p ; hsa-mir-298 ; hsa-mir-490-5p ; hsa-mir-545-5p ; hsa-mir-3688-3p ; hsa-mir-3662 ; hsa-mir-15b-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-144-3p ; hsa-mir-4786-5p ; hsa-mir-4698 ; hsa-mir-4495 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-567 ; hsa-mir-944 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-6780a-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-1229-5p ; hsa-mir-3606-5p ; hsa-mir-6073 ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-3908 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4709-3p ; hsa-mir-5093 ; hsa-mir-5584-5p ; hsa-mir-6502-3p ; hsa-mir-3646 ; hsa-mir-3120-3p ; hsa-mir-551b-5p ; hsa-mir-4484 ; hsa-mir-424-3p ; hsa-mir-548ad-3p ; hsa-mir-3672 ; hsa-mir-4461 ; hsa-mir-6864-3p

Nearest CpG islands

None/Target, None/Upstream, None/Downstream