Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS45000026
Fusion event
XMRV-PIK3C2B integration
Validated
Yes
Detection method
Nested PCR, nested RT-PCR, or quantitative RT-PCR
Data source
Curated
Sample type
Disease
Prostate cancer (PC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
Virus Sequence
Virus name
XMRV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
Start
End
(Hg38)
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-128-3p ; hsa-mir-15b-5p ; hsa-mir-4469 ; hsa-mir-218-5p ; hsa-mir-4314 ; hsa-mir-4753-3p ; hsa-mir-4672 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4795-5p ; hsa-mir-4320 ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-302d-5p ; hsa-mir-6506-5p ; hsa-mir-302b-5p ; hsa-mir-619-5p ; hsa-mir-4646-5p ; hsa-mir-3192-5p ; hsa-mir-204-3p ; hsa-mir-130b-5p ; hsa-mir-4459 ; hsa-mir-4433a-3p ; hsa-mir-6768-5p ; hsa-mir-551b-5p ; hsa-mir-101-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-2114-5p ; hsa-mir-6507-3p ; hsa-mir-4774-5p ; hsa-mir-4490 ; hsa-mir-3613-3p ; hsa-mir-7151-5p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-3679-3p ; hsa-mir-1236-3p ; hsa-mir-877-3p ; hsa-mir-4286 ; hsa-mir-483-3p ; hsa-mir-362-5p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
im, S., et al. Fidelity of target site duplication and sequence preference during integration of xenotropic murine leukemia virus-related virus. PLoS One,2010, 5(4): e10255.