VISDB - VIS Curation

Basic Information

VIS ID

TVIS10000002

Fusion name

HBV-chr9:q22.33 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2019

Pubmed ID

30535432

Virus Sequence

Virus name

Subtype

Reference genome

GQ377546.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AGAGGTGAAAAAGGAAACCTAGCTGACCCCATAGATCCTAAATCCTTTCCCCACTCCTTTCTGTTCCCTGAAGACAACTTTAGAGACTGCCCCCACCCTAGATCTCCCTGAATGATCCCCACCA

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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