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VISDB
Viral Integration Site DataBase
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My curation
TVIS10000004
Basic Information
VIS ID
TVIS10000004
Fusion name
HBV-chr2:q35 integration
State
Validated
Fusion type
Deatction Method
PCR and Sanger sequencing
Curated Way
Curated
Sample
Tumor
Disease
Hepatocellular carcinoma
Quality evaluation
Perfect
Reported year
2019
Pubmed ID
30535432
Virus Sequence
Virus name
Subtype
Reference genome
KR014001.1
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Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
AACTGCACTTGTATTCCCATCCCATCATCTTTGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCAGTTTTCTAGTGCCAT| |TTGTTCAGTGATTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh37/hg19
Edit
Start
End
Orient
Location type
Target sequence
Junction sequence
CGCAAGATTCGTATGGGAGTGGGCGTCCGTAGGATTAGCGAGGCTCAGTTTTCTATTTCCATATAATTTTATGCATGAATTTTGGTGTTCATGTGGCTTGGA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
CGCAAGATTCGTATGGGAGTGGGCGTCCGTAGGATTAGCGAGGCTCAGTTTTCTATTTCCATATAATTTTATGCATGAATTTTGGTGTTCATGTGGCTTGGA
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Human Sequence
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Virus Sequence
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Overlapped sequence
/
Unknown sequence
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