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VISDB
Viral Integration Site DataBase
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My curation
TVIS10000049
Basic Information
VIS ID
TVIS10000049
Fusion name
HBV-chr1 integration
State
Validated
Fusion type
Deatction Method
invPCR
Curated Way
Curated
Sample
Cell line
Disease
Hepatocellular carcinoma
Quality evaluation
Perfect
Reported year
2018
Pubmed ID
29437961
Virus Sequence
Virus name
Subtype
Reference genome
U95551.1
Edit
Strand
Gene
Region type
Start
End
Orient
Integrated Sequence
GACTGGGAGGAGTTGGGGGAGGAGATTAGATTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCA| |CCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTT
Host Sequence
Chromosome
Cytoband
Reference genome
GRCh38.p7
Edit
Start
End
Orient
Location type
Fragile sites / regions
FRA1F
Target sequence
Junction sequence
AATCTTCGAACGGACCCGAATGGAATCATCTCTGCGCACCAGCACCATGCAACTTTTTCA
iHostLeftEnd
iHostRightBegin
iVirusLeft
iVirusRight
Junction sequence preview
AATCTTCGAACGGACCCGAATGGAATCATCTCTGCGCACCAGCACCATGCAACTTTTTCA
* Color:
Human Sequence
/
Virus Sequence
/
Overlapped sequence
/
Unknown sequence
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