VISDB - VIS Curation

Basic Information

VIS ID

TVIS10000096

Fusion name

HBV-LOC105373567 integration

State

Validated

Fusion type

Deatction Method

invPCR

Curated Way

Curated

Sample

Cell line

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2018

Pubmed ID

29437961

Virus Sequence

Virus name

Subtype

Reference genome

U95551.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh38.p7 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA2S ; FRA2B

Target gene

LOC105373567

Nearby gene

PAX8(-42717) ; IGKV1OR2-108(+84729) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TAAAGGTCTTTGTACTAGGAGGCTGTAGGCGAGTATAACTGGGCATGTGGCACCCACTAG

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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