VISDB - VIS Curation

Basic Information

VIS ID

TVIS10000439

Fusion name

AAV2-TNFSF10 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2015

Pubmed ID

26301494

Virus Sequence

Virus name

Subtype

Reference genome

AF043303.1 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

TNFSF10

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

AAGGAAAATGACAGAATTTTTGTTTCTGTAACAAATGAGCACTTGATAGACATGGACCATGAAGCCAGTTTTTTTGGGGCCTTTTTAGTTGGCTAACTGACCTGGAAAGAAAAAGCAATAACCTCAAAGTGACTATTCAGTTTTCAGGATGATACACTATGAAGATGTTTCAAAAAATCTGACCAAAACAAACAAACAGAAAACAGAAAACAAAAAAACCTCTATGCAGATACCTGACTCGTAATCTGTAATTGCTTGTTAATCAATAAACCGTTTAATTCGTTTCAGTTGAACTTTGGTCTCTGCGTGCTTCTTTCTTATCTAGTTTACATGGCTACGTAGATAAGTAGCATGGCGGGTTAATCATTAACTATAAGGAACCCCTAGTGATGGAGTTGGCCACTCCCTCTCTGCGCGCTCGCTCGCTCACTGAGGCCGGTTTTTGCTTTCTTAAGTAATAGGCTTGGAATTTATCCCGGAATACATCTC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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