VISDB - VIS Curation

Basic Information

VIS ID

TVIS10000476

Fusion name

HBV-SHANK2 integration

State

Validated

Fusion type

Deatction Method

PCR and Sanger sequencing

Curated Way

Curated

Sample

Tumor

Disease

Hepatocellular carcinoma

Quality evaluation

Perfect

Reported year

2016

Pubmed ID

27703150

Virus Sequence

Virus name

Subtype

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Fragile sites / regions

FRA11H

Target gene

SHANK2

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

TGGGAAGTCCGTCTTTTGACAAGAGCCGCCCATACACAATTTCCATCCCCTGCATAAGTGCCTCAAGTAGAAGATGGAGATGGGCAGCTGATAATCAAACTGTTCTTGAATATTTGGTGTCTTTTGGAGTGTGGATTCGCCCTCCTCCTGC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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