VISDB - VIS Curation

Basic Information

VIS ID

TVIS10004254

Fusion name

HBV-chr13 integration

State

Not Validated

Fusion type

Deatction Method

HIVID

Curated Way

Curated

Sample

Nontumor

Disease

Hepatocellular carcinoma

Quality evaluation

Normal

Reported year

2016

Pubmed ID

27703150

Virus Sequence

Virus name

Subtype

Reference genome

AF090842.1;AB033554.1;AB014381.1;M32138.1;AB032431.1;AB036910.1;AB064310;AY090454.1Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Nearby gene

TEX29(-53766) ; SOX1(+671553) ;

Nearest cancer gene

SOX1(TSG, +671553) ;

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

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