VISDB - VIS Curation

Basic Information

VIS ID

TVIS10005293

Fusion name

HBV-SEMA5A integration

State

Not Validated

Fusion type

Deatction Method

PCR and Ultra-deep sequencing

Curated Way

Curated

Sample

Nontumor

Disease

Hepatocellular carcinoma

Quality evaluation

Normal

Reported year

2018

Pubmed ID

29861854

Virus Sequence

Virus name

Subtype

Reference genome

AP011098 Edit

Strand

Gene

Region type

Start

End

Orient

Integrated Sequence

Host Sequence

Chromosome

Cytoband

Reference genome

GRCh37/hg19 Edit

Start

End

Orient

Location type

Target gene

SEMA5A

Target sequence

Junction sequence

iHostLeftEnd

iHostRightBegin

iVirusLeft

iVirusRight

Junction sequence preview

CATCCCGGGACGC

* Color: Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence

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